2Q6N Oxidoreductase date Jun 05, 2007
title Structure Of Cytochrome P450 2b4 With Bound 1-(4-Cholorophen Imidazole
authors Y.Zhao, L.Sun, B.K.Muralidhara, S.Kumar, M.A.White, C.D.Stout, J.R
compound source
Molecule: Cytochrome P450 2b4
Chain: A, B, C, D, E, F, G
Synonym: Cypiib4, P450-Lm2, Isozyme 2, P450 Types B0 And B1
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Cyp2b4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.000 147.310 238.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand 1CI, HEM BindingDB enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Primary referenceStructural and thermodynamic consequences of 1-(4-chlorophenyl)imidazole binding to cytochrome P450 2B4., Zhao Y, Sun L, Muralidhara BK, Kumar S, White MA, Stout CD, Halpert JR, Biochemistry. 2007 Oct 16;46(41):11559-67. Epub 2007 Sep 22. PMID:17887776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (494 Kb) [Save to disk]
  • Biological Unit Coordinates (2q6n.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (2q6n.pdb2.gz) 74 Kb
  • Biological Unit Coordinates (2q6n.pdb3.gz) 75 Kb
  • Biological Unit Coordinates (2q6n.pdb4.gz) 74 Kb
  • Biological Unit Coordinates (2q6n.pdb5.gz) 75 Kb
  • Biological Unit Coordinates (2q6n.pdb6.gz) 75 Kb
  • Biological Unit Coordinates (2q6n.pdb7.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 2Q6N
  • CSU: Contacts of Structural Units for 2Q6N
  • Likely Quarternary Molecular Structure file(s) for 2Q6N
  • Structure Factors (1334 Kb)
  • Retrieve 2Q6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q6N from S2C, [Save to disk]
  • Re-refined 2q6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q6N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q6N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q6n] [2q6n_D] [2q6n_G] [2q6n_B] [2q6n_F] [2q6n_A] [2q6n_C] [2q6n_E]
  • SWISS-PROT database: [P00178]
  • Domain organization of [CP2B4_RABIT] by SWISSPFAM
  • Other resources with information on 2Q6N
  • Community annotation for 2Q6N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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