2Q81 Transcription date Jun 08, 2007
title Crystal Structure Of The Miz-1 Btbpoz Domain
authors M.A.Stead, C.H.Trinh, J.A.Garnett, S.B.Carr, T.A.Edwards, S.C.Wri
compound source
Molecule: Miz-1 Protein
Chain: A, B, C, D
Fragment: Btb Domain, Residues 2-115
Synonym: Zinc Finger And Btb Domain-Containing Protein 17, Finger Protein 151, Myc-Interacting Zinc Finger Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zbtb17, Miz1, Znf151
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1
symmetry Space Group: C 2 2 21
R_factor 0.181 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.535 128.522 116.038 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand PG4 enzyme
Primary referenceA Beta-Sheet Interaction Interface Directs the Tetramerisation of the Miz-1 POZ Domain., Stead MA, Trinh CH, Garnett JA, Carr SB, Baron AJ, Edwards TA, Wright SC, J Mol Biol. 2007 Nov 2;373(4):820-6. Epub 2007 Aug 21. PMID:17880999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (2q81.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (2q81.pdb2.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 2Q81
  • CSU: Contacts of Structural Units for 2Q81
  • Likely Quarternary Molecular Structure file(s) for 2Q81
  • Structure Factors (252 Kb)
  • Retrieve 2Q81 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q81 from S2C, [Save to disk]
  • Re-refined 2q81 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Q81 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Q81
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q81, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q81_D] [2q81_C] [2q81] [2q81_A] [2q81_B]
  • SWISS-PROT database: [Q13105]
  • Domain organization of [ZBT17_HUMAN] by SWISSPFAM
  • Domain found in 2Q81: [BTB ] by SMART
    • Other resources with information on 2Q81
  • Community annotation for 2Q81 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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