2QAB Transcription date Jun 14, 2007
title Crystal Structure Of Estrogen Receptor Alpha Ligand Binding Mutant 537s Complexed With An Ethyl Indazole Compound
authors K.W.Nettles, J.B.Bruning, J.Nowak, S.K.Sharma, J.B.Hahm, Y.Shi, K. R.B.Hochberg, H.Zhou, J.A.Katzenellenbogen, B.S.Katzenellenbog A.Joachmiak, G.L.Greene
compound source
Molecule: Estrogen Receptor
Chain: A, B
Fragment: Steroid-Binding Region, Residues 298-554
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7

Molecule: Nuclear Receptor Coactivator 2
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.824 83.080 58.304 90.00 109.13 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand EI1 enzyme
Primary referenceNFkappaB selectivity of estrogen receptor ligands revealed by comparative crystallographic analyses., Nettles KW, Bruning JB, Gil G, Nowak J, Sharma SK, Hahm JB, Kulp K, Hochberg RB, Zhou H, Katzenellenbogen JA, Katzenellenbogen BS, Kim Y, Joachmiak A, Greene GL, Nat Chem Biol. 2008 Apr;4(4):241-7. Epub 2008 Mar 16. PMID:18344977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2qab.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2QAB
  • CSU: Contacts of Structural Units for 2QAB
  • Likely Quarternary Molecular Structure file(s) for 2QAB
  • Structure Factors (285 Kb)
  • Retrieve 2QAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QAB from S2C, [Save to disk]
  • Re-refined 2qab structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QAB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QAB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qab_B] [2qab_A] [2qab_C] [2qab] [2qab_D]
  • SWISS-PROT database: [P03372] [Q61026]
  • Domain organization of [ESR1_HUMAN] [NCOA2_MOUSE] by SWISSPFAM
  • Domain found in 2QAB: [HOLI ] by SMART
  • Other resources with information on 2QAB
  • Community annotation for 2QAB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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