2QO3 Transferase date Jul 19, 2007
title Crystal Structure Of [Ks3][At3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase
authors C.Khosla, E.D.Cane, Y.Tang, Y.A.Chen, C.Y.Kim
compound source
Molecule: Eryaii Erythromycin Polyketide Synthase Modules 3
Chain: A, B
Fragment: Ketosynthase-Acyltransferase Didomain Of Didomain
Synonym: 6 Deoxyerythronolide B Synthase
Ec: 2.3.1.94
Engineered: Yes
Organism_scientific: Saccharopolyspora Erythraea
Organism_taxid: 1836
Gene: Eryaii
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Payc09
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.203 139.005 102.342 90.00 106.14 90.00
method X-Ray Diffractionresolution 2.59 Å
ligand ACT, CER, CL enzyme Transferase E.C.2.3.1.94 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and mechanistic analysis of protein interactions in module 3 of the 6-deoxyerythronolide B synthase., Tang Y, Chen AY, Kim CY, Cane DE, Khosla C, Chem Biol. 2007 Aug;14(8):931-43. PMID:17719492
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (2qo3.pdb1.gz) 264 Kb
  • LPC: Ligand-Protein Contacts for 2QO3
  • CSU: Contacts of Structural Units for 2QO3
  • Likely Quarternary Molecular Structure file(s) for 2QO3
  • Structure Factors (977 Kb)
  • Retrieve 2QO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QO3 from S2C, [Save to disk]
  • Re-refined 2qo3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QO3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QO3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qo3] [2qo3_B] [2qo3_A]
  • SWISS-PROT database: [A4F7P0] [Q03132]
  • Domain organization of [A4F7P0_SACEN] [ERYA2_SACER] by SWISSPFAM
  • Domains found in 2QO3: [PKS_AT] [PKS_KS ] by SMART
  • Other resources with information on 2QO3
  • Community annotation for 2QO3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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