2R2W	Hydrolase	date	Aug 28, 2007
title	Urokinase Plasminogen Activator B-Chain-Gppe Complex
authors	E.Zeslawska
compound		source
Molecule: Plasminogen Activator, Urokinase Chain: U Fragment: Ligand Binding Domain Ec: 3.4.21.73 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plau Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21d
symmetry	Space Group: P 21 21 21	R_factor 0.199 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.310 54.760 82.760 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.01 Å
ligand	4PG, SO4	enzyme	Hydrolase E.C.3.4.21.73 BRENDA
Gene Ontology	Chain Function Process Component U
Primary reference	Geometry of GPPE binding to picrate and to the urokinase type plasminogen activator., Zeslawska E, Sturzebecher J, Oleksyn BJ, Bioorg Med Chem Lett. 2007 Nov 15;17(22):6212-5. Epub 2007 Sep 8. PMID:17905583

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (2r2w.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 2R2W CSU: Contacts of Structural Units for 2R2W Likely Quarternary Molecular Structure file(s) for 2R2W Structure Factors (131 Kb) Retrieve 2R2W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R2W from S2C, [Save to disk] Re-refined 2r2w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R2W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R2W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R2W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r2w_U] [2r2w] SWISS-PROT database: [P00749] Domain organization of [UROK_HUMAN] by SWISSPFAM Domain found in 2R2W: [Tryp_SPc ] by SMART

Other resources with information on 2R2W

Community annotation for 2R2W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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