2R68 Transferase date Sep 05, 2007
title Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p Of Halothermothrix Orenii
authors J.Sivaraman, T.K.Chua
compound source
Molecule: Glycosyl Transferase, Group 1
Chain: A
Synonym: Sucrose Phosphate Synthase
Ec: 2.4.1.14
Engineered: Yes
 Organism_scientific: Halothermothrix Orenii
Organism_taxid: 373903
Strain: H 168
Gene: Sps
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrchisa
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.399 48.189 75.008 90.00 101.21 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand F6P, GLC enzyme Transferase E.C.2.4.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of Sucrose Phosphate Synthase from Halothermothrix orenii Reveals Its Mechanism of Action and Binding Mode., Chua TK, Bujnicki JM, Tan TC, Huynh F, Patel BK, Sivaraman J, Plant Cell. 2008 Apr;20(4):1059-72. Epub 2008 Apr 18. PMID:18424616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2r68.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2R68
  • CSU: Contacts of Structural Units for 2R68
  • Likely Quarternary Molecular Structure file(s) for 2R68
  • Structure Factors (315 Kb)
  • Retrieve 2R68 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R68 from S2C, [Save to disk]
  • Re-refined 2r68 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2R68 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2R68
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R68, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r68_A] [2r68]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2R68
  • Community annotation for 2R68 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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