2R7D	Hydrolase	date	Sep 07, 2007
title	Crystal Structure Of Ribonuclease II Family Protein From Dei Radiodurans, Triclinic Crystal Form. Northeast Structural G Target Drr63
authors	J.Seetharaman, H.Neely, F.Forouhar, D.Wang, Y.Fang, K.Cunningham, R.Xia, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.H L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound		source
Molecule: Ribonuclease II Family Protein Chain: A, B, C Engineered: Yes		Organism_scientific: Deinococcus Radiodurans R1 Organism_taxid: 243230 Strain: R1, Dsm 20539, Ifo 15346, Lmg 4051 Atcc: 13939 Gene: Dr_0020 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
symmetry	Space Group: P 1	R_factor 0.221 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.762 92.205 92.345 60.08 89.57 71.11
method	X-Ray Diffraction	resolution	1.80 Å
ligand	MG, MSE	enzyme
Gene	DR
Gene Ontology	Chain Function Process Component A, C, B ribonuclease activity
Primary reference	The Structure and Enzymatic Properties of a Novel RNase II Family Enzyme from Deinococcus radiodurans., Schmier BJ, Seetharaman J, Deutscher MP, Hunt JF, Malhotra A, J Mol Biol. 2011 Nov 23. PMID:22133431

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk] Biological Unit Coordinates (2r7d.pdb1.gz) 86 Kb Biological Unit Coordinates (2r7d.pdb2.gz) 81 Kb Biological Unit Coordinates (2r7d.pdb3.gz) 83 Kb LPC: Ligand-Protein Contacts for 2R7D CSU: Contacts of Structural Units for 2R7D Likely Quarternary Molecular Structure file(s) for 2R7D Structure Factors (2297 Kb) Retrieve 2R7D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R7D from S2C, [Save to disk] Re-refined 2r7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R7D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R7D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R7D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r7d_B] [2r7d_C] [2r7d] [2r7d_A] SWISS-PROT database: [Q9RYD0] Domain organization of [Q9RYD0_DEIRA] by SWISSPFAM Domain found in 2R7D: [RNB ] by SMART

Other resources with information on 2R7D

Community annotation for 2R7D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---