2R9Y	Hydrolase Inhibitor	date	Sep 14, 2007
title	Structure Of Antiplasmin
authors	R.H.P.Law, T.Sofian, W.T.Kan, A.J.Horvath, C.R.Hitchen, C.G.Lange A.M.Buckle, J.C.Whisstock, P.B.Coughlin
compound		source
Molecule: Alpha-2-Antiplasmin Chain: A Fragment: Serpin Domain Plus C-Terminus, Unp Residues 71-49 Synonym: Alpha-2-Plasmin Inhibitor, Alpha-2-Pi, Alpha-2-Ap Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Serpinf2, Pli Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-3a
symmetry	Space Group: P 65	R_factor 0.184 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.679 115.679 100.533 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.65 Å
Gene Ontology	Chain Function Process Component A
Primary reference	X-ray crystal structure of the fibrinolysis inhibitor {alpha}2-antiplasmin., Law RH, Sofian T, Kan WT, Horvath AJ, Hitchen CR, Langendorf CG, Buckle AM, Whisstock JC, Coughlin PB, Blood. 2008 Feb 15;111(4):2049-52. Epub 2007 Dec 6. PMID:18063751

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (2r9y.pdb1.gz) 58 Kb CSU: Contacts of Structural Units for 2R9Y Likely Quarternary Molecular Structure file(s) for 2R9Y Structure Factors (778 Kb) Retrieve 2R9Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R9Y from S2C, [Save to disk] Re-refined 2r9y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R9Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R9Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R9Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r9y] [2r9y_A] SWISS-PROT database: [Q61247] Domain organization of [A2AP_MOUSE] by SWISSPFAM Domain found in 2R9Y: [SERPIN ] by SMART

Other resources with information on 2R9Y

Community annotation for 2R9Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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