2RAH Transferase date Sep 15, 2007
title Human Fdps Synthase In Complex With Novel Inhibitor
authors A.G.Evdokimov, B.L.Barnett, F.H.Ebetino, M.Pokross
compound source
Molecule: Farnesyl Pyrophosphate Synthetase
Chain: A
Synonym: Fpp Synthetase, Fps, Farnesyl Diphosphate Syntheta
Ec: 2.5.1.1, 2.5.1.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fdps, Fps, Kiaa1293
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11
symmetry Space Group: P 41 21 2
R_factor 0.217 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.171 111.171 70.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 11P, MG, SO4 enzyme Transferase E.C.2.5.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2rah.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 2RAH
  • CSU: Contacts of Structural Units for 2RAH
  • Likely Quarternary Molecular Structure file(s) for 2RAH
  • Structure Factors (448 Kb)
  • Retrieve 2RAH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RAH from S2C, [Save to disk]
  • Re-refined 2rah structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RAH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RAH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RAH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rah] [2rah_A]
  • SWISS-PROT database: [P14324]
  • Domain organization of [FPPS_HUMAN] by SWISSPFAM
  • Other resources with information on 2RAH
  • Community annotation for 2RAH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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