2RDS Oxidoreductase date Sep 24, 2007
title Crystal Structure Of Ptlh With Feoxalylglycine And Ent-1- Deoxypentalenic Acid Bound
authors Z.You, S.Omura, H.Ikeda, D.E.Cane, G.Jogl
compound source
Molecule: 1-Deoxypentalenic Acid 11-Beta Hydroxylase; Fe(II Ketoglutarate Dependent Hydroxylase;
Chain: A
Engineered: Yes
 Organism_scientific: Streptomyces Avermitilis
Organism_taxid: 33903
Gene: Ptlh
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28e
symmetry Space Group: P 21 21 2
R_factor 0.182 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.951 89.387 48.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand 1PL, FE, MG, OGA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of the Non-heme Iron Dioxygenase PtlH in Pentalenolactone Biosynthesis., You Z, Omura S, Ikeda H, Cane DE, Jogl G, J Biol Chem. 2007 Dec 14;282(50):36552-60. Epub 2007 Oct 16. PMID:17942405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2rds.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2RDS
  • CSU: Contacts of Structural Units for 2RDS
  • Likely Quarternary Molecular Structure file(s) for 2RDS
  • Structure Factors (593 Kb)
  • Retrieve 2RDS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RDS from S2C, [Save to disk]
  • Re-refined 2rds structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2RDS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RDS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RDS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rds] [2rds_A]
  • SWISS-PROT database: [Q82IZ1]
  • Domain organization of [Q82IZ1_STRAW] by SWISSPFAM
    • Other resources with information on 2RDS
  • Community annotation for 2RDS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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