2RGH	Oxidoreductase	date	Oct 01, 2007
title	Structure Of Alpha-Glycerophosphate Oxidase From Streptococcus Sp.: A Template For The Mitochondrial Alpha- Glycerophosphate Dehydrogenase
authors	T.Colussi, W.Boles, T.C.Mallett, P.A.Karplus, A.Claiborne
compound		source
Molecule: Alpha-Glycerophosphate Oxidase Chain: A Fragment: Deletion Of Residues 356-405 Synonym: Fad Dependent Oxidoreductase Ec: 1.1.3.21 Engineered: Yes Mutation: Yes		Organism_scientific: Streptococcus Sp. Organism_taxid: 1306 Gene: Glpo Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe30 Other_details: Construct With Residues 356-405 Of Streptococcus Sp. Alpha-Glycerophosphate Oxidase Deleted
symmetry	Space Group: P 21 21 2	R_factor 0.210 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.280 95.550 77.670 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	FAD, MSE, SO4	enzyme	Oxidoreductase E.C.1.1.3.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of alpha-Glycerophosphate Oxidase from Streptococcus sp.: A Template for the Mitochondrial alpha-Glycerophosphate Dehydrogenase(,)., Colussi T, Parsonage D, Boles W, Matsuoka T, Mallett TC, Karplus PA, Claiborne A, Biochemistry. 2008 Jan 22;47(3):965-977. Epub 2007 Dec 23. PMID:18154320

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk] Biological Unit Coordinates (2rgh.pdb1.gz) 186 Kb LPC: Ligand-Protein Contacts for 2RGH CSU: Contacts of Structural Units for 2RGH Likely Quarternary Molecular Structure file(s) for 2RGH Structure Factors (292 Kb) Retrieve 2RGH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2RGH from S2C, [Save to disk] Re-refined 2rgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2RGH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2RGH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2RGH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2rgh_A] [2rgh] SWISS-PROT database: [D0VWY7] [Q3Y0N9] Domain organization of [D0VWY7_STRSP] [Q3Y0N9_ENTFC] by SWISSPFAM

Other resources with information on 2RGH

Community annotation for 2RGH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---