2RGV Dna Binding Protein date Oct 05, 2007
title The Crystal Structure Of Perr-Ox Highlights 2-Oxo-Histidine Formation
authors D.A.K.Traore
compound source
Molecule: Peroxide Operon Regulator
Chain: A, B
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.211 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.250 42.700 53.020 82.05 79.98 61.63
method X-Ray Diffractionresolution 2.05 Å
ligand OHI, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • bacterial-type RNA polymeras...


    • Primary referenceStructural and functional characterization of 2-oxo-histidine in oxidized PerR protein., Traore DA, El Ghazouani A, Jacquamet L, Borel F, Ferrer JL, Lascoux D, Ravanat JL, Jaquinod M, Blondin G, Caux-Thang C, Duarte V, Latour JM, Nat Chem Biol. 2009 Jan;5(1):53-9. Epub 2008 Dec 14. PMID:19079268
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2rgv.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2RGV
  • CSU: Contacts of Structural Units for 2RGV
  • Likely Quarternary Molecular Structure file(s) for 2RGV
  • Structure Factors (149 Kb)
  • Retrieve 2RGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RGV from S2C, [Save to disk]
  • Re-refined 2rgv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2RGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RGV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RGV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rgv_B] [2rgv] [2rgv_A]
  • SWISS-PROT database: [P71086]
  • Domain organization of [PERR_BACSU] by SWISSPFAM
    • Other resources with information on 2RGV
  • Community annotation for 2RGV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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