2RS9 Transcription date Dec 08, 2011
title Solution Structure Of The Bromodomain Of Human Brpf1 In Comp Histone H4k5ac Peptide
authors X.Qin, T.Nagashima, T.Umehara, F.Hayashi, S.Yokoyama, Riken Struc Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Acetylated Lysine 5 Of Peptide From Histone H4
Chain: A
Synonym: H4k5ac
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Peregrin
Chain: B
Fragment: Bromodomain, Unp Residues 633-740
Synonym: Bromodomain And Phd Finger-Containing Protein 1, P Br140;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brpf1, Br140
Expression_system: Cell-Free Synthesis
methodSolution NMR
ligand ALY enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (669 Kb) [Save to disk]
  • Biological Unit Coordinates (2rs9.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2RS9
  • CSU: Contacts of Structural Units for 2RS9
  • Original NMR restraints for 2RS9 from PDB
  • Retrieve 2RS9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RS9 from S2C, [Save to disk]
    • View 2RS9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RS9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RS9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rs9_B] [2rs9_A] [2rs9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2RS9: [BROMO ] by SMART
    • Other resources with information on 2RS9
  • Community annotation for 2RS9 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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