2V0D	Transferase	date	May 14, 2007
title	Crystal Structure Of Human Cdk2 Complexed With A Thiazolidin Inhibitor
authors	C.M.Richardson, P.Dokurno, J.B.Murray, A.E.Surgenor
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: P33 Protein Kinase, Cyclin Dependent Kinase 2 Ec: 2.7.1.37, 2.7.11.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf21 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.459 71.850 72.011 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	C53, CL	enzyme	Transferase E.C.2.7.1.37 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of a potent CDK2 inhibitor with a novel binding mode, using virtual screening and initial, structure-guided lead scoping., Richardson CM, Nunns CL, Williamson DS, Parratt MJ, Dokurno P, Howes R, Borgognoni J, Drysdale MJ, Finch H, Hubbard RE, Jackson PS, Kierstan P, Lentzen G, Moore JD, Murray JB, Simmonite H, Surgenor AE, Torrance CJ, Bioorg Med Chem Lett. 2007 Jul 15;17(14):3880-5. Epub 2007 May 6. PMID:17570665

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2v0d.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 2V0D CSU: Contacts of Structural Units for 2V0D Likely Quarternary Molecular Structure file(s) for 2V0D Structure Factors (108 Kb) Retrieve 2V0D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V0D from S2C, [Save to disk] Re-refined 2v0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V0D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V0D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V0D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v0d] [2v0d_A] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 2V0D: [S_TKc ] by SMART

Other resources with information on 2V0D

Community annotation for 2V0D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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