2V5Q Transferase date Jul 08, 2007
title Crystal Structure Of Wild-Type Plk-1 Kinase Domain In Comple Selective Darpin
authors T.M.Bandeiras, R.C.Hillig, P.M.Matias, U.Eberspaecher, J.Fanghae M.Thomaz, S.Miranda, K.Crusius, V.Puetter, P.Amstutz, M.Gulotti- Georgieva, H.K.Binz, C.Holz, A.A.P.Schmitz, C.Lang, P.Donner, U.E M.A.Carrondo, B.Mueller-Tiemann
compound source
Molecule: Serinethreonine-Protein Kinase Plk1
Chain: A, B
Fragment: Kinase Domain, Residues 33-345
Synonym: Plk-1, Serinethreonine-Protein Kinase 13, Stpk13, Kinase 1, Human Polo-Like Kinase 1;
Ec: 2.7.11.21
Engineered: Yes
Other_details: Construct 4
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Design Ankyrin Repeat Protein
Chain: C, D
Engineered: Yes
Other_details: Variant 3h10

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Designed Protein
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.329 135.225 136.824 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Transferase E.C.2.7.11.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of wild-type Plk-1 kinase domain in complex with a selective DARPin., Bandeiras TM, Hillig RC, Matias PM, Eberspaecher U, Fanghanel J, Thomaz M, Miranda S, Crusius K, Putter V, Amstutz P, Gulotti-Georgieva M, Binz HK, Holz C, Schmitz AA, Lang C, Donner P, Egner U, Carrondo MA, Muller-Tiemann B, Acta Crystallogr D Biol Crystallogr. 2008 Apr;64(Pt 4):339-53. Epub 2008, Mar 19. PMID:18391401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (2v5q.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (2v5q.pdb2.gz) 69 Kb
  • CSU: Contacts of Structural Units for 2V5Q
  • Likely Quarternary Molecular Structure file(s) for 2V5Q
  • Retrieve 2V5Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V5Q from S2C, [Save to disk]
  • View 2V5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V5Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V5Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v5q_C] [2v5q_B] [2v5q] [2v5q_D] [2v5q_A]
  • SWISS-PROT database: [P53350]
  • Domain organization of [PLK1_HUMAN] by SWISSPFAM
  • Domains found in 2V5Q: [ANK] [S_TKc ] by SMART
  • Other resources with information on 2V5Q
  • Community annotation for 2V5Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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