2V9U Transport Protein date Aug 27, 2007
title Rim Domain Of Main Porin From Mycobacteria Smegmatis
authors D.Grueninger, M.O.P.Ziegler, J.W.A.Koetter, N.Treiber, M.S.Schu G.E.Schulz
compound source
Molecule: Mspa
Chain: A, B, C, D, E, F, G, H
Fragment: Rim Domain, Residues 28-96,149-211
Engineered: Yes
 Organism_scientific: Mycobacterium Smegmatis
Organism_taxid: 246196
Strain: Mc2 155
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pmn501
symmetry Space Group: C 1 2 1
R_factor 0.273 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.377 105.652 102.963 90.00 109.26 90.00
method X-Ray Diffractionresolution 2.59 Å
Primary referenceDesigned protein-protein association., Grueninger D, Treiber N, Ziegler MO, Koetter JW, Schulze MS, Schulz GE, Science. 2008 Jan 11;319(5860):206-9. PMID:18187656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (2v9u.pdb1.gz) 159 Kb
  • CSU: Contacts of Structural Units for 2V9U
  • Likely Quarternary Molecular Structure file(s) for 2V9U
  • Structure Factors (298 Kb)
  • Retrieve 2V9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V9U from S2C, [Save to disk]
  • Re-refined 2v9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V9U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V9U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v9u_F] [2v9u_D] [2v9u_C] [2v9u_E] [2v9u_A] [2v9u_H] [2v9u_B] [2v9u] [2v9u_G]
  • SWISS-PROT database: [Q9RLP7]
  • Belongs to the mycobacterial porin (mbp) family according to TCDB.
  • Domain organization of [Q9RLP7_MYCSM] by SWISSPFAM
    • Other resources with information on 2V9U
  • Community annotation for 2V9U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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