2V9V Transcription date Aug 27, 2007
title Crystal Structure Of Moorella Thermoacetica Selb(377-511)
authors O.Ganichkin, M.C.Wahl
compound source
Molecule: Selenocysteine-Specific Elongation Factor
Chain: A
Fragment: Winged-Helix Domains 1 And 2, Residues 377-511
Synonym: Selb, Selb Translation Factor
Engineered: Yes
 Organism_scientific: Moorella Thermoacetica
Organism_taxid: 1525
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_plasmid: Petm-11
symmetry Space Group: C 1 2 1
R_factor 0.120 R_Free 0.141
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.349 46.087 58.683 90.00 120.45 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand CL, NA enzyme
note 2V9V is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational switches in winged-helix domains 1 and 2 of bacterial translation elongation factor SelB., Ganichkin O, Wahl MC, Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1075-81. Epub 2007, Sep 19. PMID:17881825
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (2v9v.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2V9V
  • CSU: Contacts of Structural Units for 2V9V
  • Likely Quarternary Molecular Structure file(s) for 2V9V
  • Structure Factors (434 Kb)
  • Retrieve 2V9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V9V from S2C, [Save to disk]
  • Re-refined 2v9v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2V9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2V9V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2V9V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v9v_A] [2v9v]
  • SWISS-PROT database: [Q46455]
  • Domain organization of [SELB_MOOTH] by SWISSPFAM
    • Other resources with information on 2V9V
  • Community annotation for 2V9V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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