2VDR		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CA, GOL, MAN, MG, NAG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis for distinctive recognition of fibrinogen gammaC peptide by the platelet integrin alphaIIbbeta3., Springer TA, Zhu J, Xiao T, J Cell Biol. 2008 Aug 25;182(4):791-800. Epub 2008 Aug 18. PMID:18710925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk] Biological Unit Coordinates (2vdr.pdb1.gz) 237 Kb LPC: Ligand-Protein Contacts for 2VDR CSU: Contacts of Structural Units for 2VDR Likely Quarternary Molecular Structure file(s) for 2VDR Structure Factors (1133 Kb) Retrieve 2VDR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VDR from S2C, [Save to disk] Re-refined 2vdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VDR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vdr] [2vdr_L] [2vdr_A] [2vdr_B] [2vdr_C] [2vdr_H] SWISS-PROT database: [P02679] [P01837] [P08514] [P05106] Domains found in 2VDR: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

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