2VGD	Hydrolase	date	Nov 12, 2007
title	Crystal Structure Of Environmental Isolated Gh11 In Complex Xylobiose And Feruloyl-Arabino-Xylotriose
authors	M.Vardakou, C.Dumon, J.E.Flint, J.W.Murray, P.Christakopoulos, D. N.Juge, R.J.Lewis, H.J.Gilbert
compound		source
Molecule: Enxyn11a Chain: A Ec: 3.2.1.8 Engineered: Yes Other_details: Gh11 Catalytic Domain		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pse420-Chis
symmetry	Space Group: P 41 21 2	R_factor 0.175 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.470 76.470 102.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	FX3, GOL, NA, XYP	enzyme	Hydrolase E.C.3.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Understanding the Structural Basis for Substrate and Inhibitor Recognition in Eukaryotic GH11 Xylanases., Vardakou M, Dumon C, Murray JW, Christakopoulos P, Weiner DP, Juge N, Lewis RJ, Gilbert HJ, Flint JE, J Mol Biol. 2007 Nov 12;. PMID:18078955

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (2vgd.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 2VGD CSU: Contacts of Structural Units for 2VGD Likely Quarternary Molecular Structure file(s) for 2VGD Structure Factors (383 Kb) Retrieve 2VGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VGD from S2C, [Save to disk] Re-refined 2vgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2VGD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VGD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vgd] [2vgd_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2VGD

Community annotation for 2VGD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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