2VJW Hydrolase date Dec 14, 2007
title Crystal Structure Of The Second Gaf Domain Of Devs From Mycobacterium Smegmatis
authors B.S.Kang, H.Y.Cho, H.J.Cho
compound source
Molecule: Gaf Family Protein
Chain: A
Fragment: Residues 232-380
Synonym: Gaf-B
Engineered: Yes
Other_details: 232-373 Of Devs Protein
 Organism_scientific: Mycobacterium Smegmatis
Organism_taxid: 1772
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_plasmid: Pgst-Parallel1
symmetry Space Group: P 61
R_factor 0.208 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.232 73.232 48.542 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.0 Å
ligand MSE enzyme
Primary referenceO2- and NO-sensing mechanism through the DevSR two-component system in Mycobacterium smegmatis., Lee JM, Cho HY, Cho HJ, Ko IJ, Park SW, Baik HS, Oh JH, Eom CY, Kim YM, Kang BS, Oh JI, J Bacteriol. 2008 Oct;190(20):6795-804. Epub 2008 Aug 15. PMID:18708494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (2vjw.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2VJW
  • CSU: Contacts of Structural Units for 2VJW
  • Likely Quarternary Molecular Structure file(s) for 2VJW
  • Structure Factors (131 Kb)
  • Retrieve 2VJW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VJW from S2C, [Save to disk]
  • Re-refined 2vjw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VJW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VJW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VJW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vjw] [2vjw_A]
  • SWISS-PROT database: [A0R2U9]
  • Domain organization of [A0R2U9_MYCS2] by SWISSPFAM
  • Domain found in 2VJW: [GAF ] by SMART
    • Other resources with information on 2VJW
  • Community annotation for 2VJW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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