2VMZ Transferase date Jan 29, 2008
title Crystal Structure Of F351gbsshmt In Complex With Gly
authors V.Rajaram, V.R.Pai, S.Bisht, B.S.Bhavani, N.Appaji Rao, H.S.Savit M.R.N.Murthy
compound source
Molecule: Serine Hydroxymethyltransferase
Chain: A
Fragment: Residues 1-405
Synonym: Shmt, Serine Methylase
Ec: 2.1.2.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Prset C
symmetry Space Group: P 21 21 2
R_factor 0.183 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.361 106.582 57.306 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GLY, MRD, PLP enzyme Transferase E.C.2.1.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional studies of Bacillus stearothermophilus serine hydroxymethyltransferase: the role of N341, Y60 and F351 in tetrahydrofolate binding., Pai VR, Rajaram V, Bisht S, Bhavani BS, Rao NA, Murthy MR, Savithri HS, Biochem J. 2008 Dec 1. PMID:19046138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2vmz.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 2VMZ
  • CSU: Contacts of Structural Units for 2VMZ
  • Likely Quarternary Molecular Structure file(s) for 2VMZ
  • Structure Factors (549 Kb)
  • Retrieve 2VMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VMZ from S2C, [Save to disk]
  • Re-refined 2vmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2VMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2VMZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VMZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vmz_A] [2vmz]
  • SWISS-PROT database: [Q7SIB6]
  • Domain organization of [Q7SIB6_BACST] by SWISSPFAM
  • Other resources with information on 2VMZ
  • Community annotation for 2VMZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science