2VN4 Hydrolase date Jan 30, 2008
title Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jec
authors R.Bott, M.Sandgren, H.Hansson
compound source
Molecule: Glucoamylase
Chain: A
Ec: 3.2.1.3
 Organism_scientific: Hypocrea Jecorina
Organism_taxid: 51453
symmetry Space Group: P 21 21 21
R_factor 0.154 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.185 99.232 121.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand BTB, MAN, NAG enzyme Hydrolase E.C.3.2.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of an intact glycoside hydrolase family 15 glucoamylase from Hypocrea jecorina., Bott R, Saldajeno M, Cuevas W, Ward D, Scheffers M, Aehle W, Karkehabadi S, Sandgren M, Hansson H, Biochemistry. 2008 May 27;47(21):5746-54. Epub 2008 May 6. PMID:18457422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (2vn4.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 2VN4
  • CSU: Contacts of Structural Units for 2VN4
  • Likely Quarternary Molecular Structure file(s) for 2VN4
  • Retrieve 2VN4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VN4 from S2C, [Save to disk]
    • View 2VN4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VN4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VN4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vn4] [2vn4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2VN4: [CBM_2 ] by SMART
    • Other resources with information on 2VN4
  • Community annotation for 2VN4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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