2VQC Structure of a DNA binding winged-helix protein, F-112, from Sulfolobus Spindle-shaped Virus 1. date
authors Menon, S.K., Kraft, P., Corn, G.J., Wiedenheft, B., Young, M.J., Lawrence, C.M.
compound source
symmetry
R_factor
R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand MSE enzyme
note 2VQC is a representative structure and supersedes 2CMX
Primary referenceCysteine usage in Sulfolobus spindle-shaped virus 1 and extension to hyperthermophilic viruses in general., Menon SK, Maaty WS, Corn GJ, Kwok SC, Eilers BJ, Kraft P, Gillitzer E, Young MJ, Bothner B, Lawrence CM, Virology. 2008 Jul 5;376(2):270-8. Epub 2008 May 8. PMID:18471851
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (2vqc.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2VQC
  • CSU: Contacts of Structural Units for 2VQC
  • Likely Quarternary Molecular Structure file(s) for 2VQC
  • Structure Factors (61 Kb)
  • Retrieve 2VQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VQC from S2C, [Save to disk]
  • Re-refined 2vqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VQC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VQC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vqc_A] [2vqc]
  • SWISS-PROT database: [P20220]
  • Domain organization of [F112_SSV1] by SWISSPFAM
    • Other resources with information on 2VQC
  • Community annotation for 2VQC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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