2VTL	Transferase	date	May 15, 2008
title	Identification Of N-(4-Piperidinyl)-4-(2,6-Dichlorobenzoylam Pyrazole-3-Carboxamide (At7519), A Novel Cyclin Dependent K Inhibitor Using Fragment-Based X-Ray Crystallography And St Based Drug Design
authors	P.G.Wyatt, A.J.Woodhead, J.A.Boulstridge, V.Berdini, M.G.Carr, D. D.Danillon, D.J.Davis, L.A.Devine, T.R.Early, R.E.Feltell, E.J.L R.L.Mcmenamin, E.F.Navarro, M.A.O'Brien, M.O'Reilly, M.Reule, G. L.C.A.Seavers, D.Smith, M.S.Squires, G.Trewartha, M.T.Walker, A.J.Woolford
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: P33 Protein Kinase, Cyclin Dependent Kinase 2 Ec: 2.7.11.1, 2.7.11.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.179 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.467 71.627 71.982 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	LZ5 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of N-(4-piperidinyl)-4-(2,6-dichlorobenzoylamino)-1H-pyrazole-3-carboxamide (AT7519), a novel cyclin dependent kinase inhibitor using fragment-based X-ray crystallography and structure based drug design., Wyatt PG, Woodhead AJ, Berdini V, Boulstridge JA, Carr MG, Cross DM, Davis DJ, Devine LA, Early TR, Feltell RE, Lewis EJ, McMenamin RL, Navarro EF, O'Brien MA, O'Reilly M, Reule M, Saxty G, Seavers LC, Smith DM, Squires MS, Trewartha G, Walker MT, Woolford AJ, J Med Chem. 2008 Aug 28;51(16):4986-99. Epub 2008 Jul 26. PMID:18656911

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (2vtl.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 2VTL CSU: Contacts of Structural Units for 2VTL Likely Quarternary Molecular Structure file(s) for 2VTL Structure Factors (251 Kb) Retrieve 2VTL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VTL from S2C, [Save to disk] Re-refined 2vtl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VTL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VTL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VTL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vtl_A] [2vtl] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 2VTL: [S_TKc ] by SMART

Other resources with information on 2VTL

Community annotation for 2VTL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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