2VXF Transcription date Jul 03, 2008
title Solution Structure Of The Lsm-Domain Of Zebrafish Rap55
authors F.Tritschler, M.Coles, V.Truffault
compound source
Molecule: Lsm14a Protein
Chain: A
Synonym: Danio Rerio Rap55
Engineered: Yes
Mutation: Yes
 Organism_scientific: Danio Rerio
Organism_common: Zebra Fish
Organism_taxid: 7955
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peu-His
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA similar mode of interaction enables Trailer Hitch and EDC3 to associate with DCP1 and Me31B in distinct protein complexes., Tritschler F, Eulalio A, Helms S, Schmidt S, Coles M, Weichenrieder O, Izaurralde E, Truffault V, Mol Cell Biol. 2008 Sep 2. PMID:18765641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (468 Kb) [Save to disk]
  • Biological Unit Coordinates (2vxf.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2VXF
  • Original NMR restraints for 2VXF from PDB
  • Retrieve 2VXF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VXF from S2C, [Save to disk]
    • View 2VXF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VXF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VXF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vxf_A] [2vxf]
  • SWISS-PROT database: [Q7SXR4]
  • Domain organization of [Q7SXR4_DANRE] by SWISSPFAM
  • Domain found in 2VXF: [LSM14 ] by SMART
    • Other resources with information on 2VXF
  • Community annotation for 2VXF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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