2VZ4 Transcription date Jul 30, 2008
title The N-Terminal Domain Of Merr-Like Protein Tipal Bound To Pr
authors M.G.Allan, J.Stetefeld, T.Schirmer
compound source
Molecule: Hth-Type Transcriptional Activator Tipa
Chain: A
Fragment: Dna-Binding Domain Tipan, Residues 2-109
Synonym: Tipal
Engineered: Yes
 Organism_scientific: Streptomyces Lividans
Organism_taxid: 1916
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Modified Pet22b

Molecule: 5'-D(Cptpcpcptpcpapcpgptp Cpapcpgptpgpapgpgptpg)-3';
Chain: B
Synonym: Tipa Promoter
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptomyces Lividans
Organism_taxid: 1916
symmetry Space Group: P 21 21 2
R_factor 0.239 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.850 67.467 73.129 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2vz4.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 2VZ4
  • Structure Factors (85 Kb)
  • Retrieve 2VZ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VZ4 from S2C, [Save to disk]
  • Re-refined 2vz4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VZ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VZ4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VZ4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vz4] [2vz4_B] [2vz4_A]
  • SWISS-PROT database: [P0A4T9]
  • Domain organization of [TIPA_STRLI] by SWISSPFAM
  • Domain found in 2VZ4: [HTH_MERR ] by SMART
    • Other resources with information on 2VZ4
  • Community annotation for 2VZ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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