2W4K	Transferase	date	Nov 27, 2008
title	X-Ray Structure Of A Dap-Kinase 2-302
authors	I.De Diego, J.Kuper, F.Lehmann, M.Wilmanns
compound		source
Molecule: Death-Associated Protein Kinase 1 Chain: A Fragment: Catalytic Autoinhibitory Domain, Residues 1-302 Synonym: Death Associated Protein Kinase I Dapk, Dap Kinase Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Petm11
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.310 76.970 108.936 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ADP, MG	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A PEF/Y Substrate Recognition and Signature Motif Plays a Critical Role in DAPK-Related Kinase Activity., Temmerman K, de Diego I, Pogenberg V, Simon B, Jonko W, Li X, Wilmanns M, Chem Biol. 2014 Jan 14. pii: S1074-5521(13)00457-2. doi:, 10.1016/j.chembiol.2013.12.008. PMID:24440081

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2w4k.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 2W4K CSU: Contacts of Structural Units for 2W4K Structure Factors (475 Kb) Retrieve 2W4K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2W4K from S2C, [Save to disk] Re-refined 2w4k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2W4K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2W4K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2W4K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2w4k_A] [2w4k] SWISS-PROT database: [P53355] Domain organization of [DAPK1_HUMAN] by SWISSPFAM Domain found in 2W4K: [S_TKc ] by SMART

Other resources with information on 2W4K

Community annotation for 2W4K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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