2W5E Hydrolase date Dec 10, 2008
title Structural And Biochemical Analysis Of Human Pathogenic Astrovirus Serine Protease At 2.0 Angstrom Resolution
authors S.Speroni, J.Rohayem, S.Nenci, D.Bonivento, I.Robel, J.Barthel, B.Coutard, B.Canard, A.Mattevi
compound source
Molecule: Putative Serine Protease
Chain: A, B, C, D, E, F
Fragment: Residues 432-587
Engineered: Yes
 Organism_scientific: Human Astrovirus 1
Organism_taxid: 12456
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pdest14
symmetry Space Group: P 31 2 1
R_factor 0.234 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.047 135.047 189.955 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CD, CL enzyme
Primary referenceStructural and Biochemical Analysis of Human Pathogenic Astrovirus Serine Protease at 2.0 A Resolution., Speroni S, Rohayem J, Nenci S, Bonivento D, Robel I, Barthel J, Luzhkov VB, Coutard B, Canard B, Mattevi A, J Mol Biol. 2009 Feb 26. PMID:19249313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (2w5e.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 2W5E
  • CSU: Contacts of Structural Units for 2W5E
  • Likely Quarternary Molecular Structure file(s) for 2W5E
  • Structure Factors (1009 Kb)
  • Retrieve 2W5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W5E from S2C, [Save to disk]
  • Re-refined 2w5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2W5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W5E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W5E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w5e_B] [2w5e] [2w5e_F] [2w5e_D] [2w5e_C] [2w5e_A] [2w5e_E]
  • SWISS-PROT database: [Q3ZN04]
  • Domain organization of [Q3ZN04_HASV1] by SWISSPFAM
    • Other resources with information on 2W5E
  • Community annotation for 2W5E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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