2WAC Splicing date Feb 04, 2009
title Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn (P
authors A.Friberg, L.Corsini, M.Sattler
compound source
Molecule: Cg7008-Pa
Chain: A, B
Fragment: Tsn Domain, Tudor And Sn5, Residues 700-916
Synonym: Ld20211p, Tudor-Sn
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: C 1 2 1
R_factor 0.227 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.560 47.040 129.770 90.00 107.32 90.00
method X-Ray Diffractionresolution 2.10 Å
Primary referenceStructure and Ligand Binding of the Extended Tudor Domain of D. melanogaster Tudor-SN., Friberg A, Corsini L, Mourao A, Sattler M, J Mol Biol. 2009 Feb 14. PMID:19232356
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2wac.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (2wac.pdb2.gz) 36 Kb
  • CSU: Contacts of Structural Units for 2WAC
  • Likely Quarternary Molecular Structure file(s) for 2WAC
  • Structure Factors (381 Kb)
  • Retrieve 2WAC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WAC from S2C, [Save to disk]
  • Re-refined 2wac structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WAC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WAC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WAC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wac] [2wac_B] [2wac_A]
  • SWISS-PROT database: [Q9W0S7]
  • Domain organization of [Q9W0S7_DROME] by SWISSPFAM
  • Domains found in 2WAC: [SNc] [TUDOR ] by SMART
    • Other resources with information on 2WAC
  • Community annotation for 2WAC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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