2WEB Hydrolase date Feb 03, 1998
title Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex Wi Phosphonate Inhibitor: Methyl(2s)-[1-(((N-Formyl)-L-Valyl)A Naphthyl)Ethyl)Hydroxyphosphinyloxy]-3-Phenylpropanoate, So
authors J.Ding, M.E.Fraser, M.N.G.James
compound source
Molecule: Penicillopepsin
Chain: A
Ec: 3.4.23.20
 Organism_scientific: Penicillium Janthinellum
Organism_taxid: 5079
symmetry Space Group: C 1 2 1
R_factor 0.151 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.380 46.550 66.190 90.00 115.78 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MAN, PP4, SO4 enzyme Hydrolase E.C.3.4.23.20 BRENDA
note 2WEB supersedes 1WEB
related structures by homologous chain: 2WEC, 2WED
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2web.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 2WEB
  • CSU: Contacts of Structural Units for 2WEB
  • Likely Quarternary Molecular Structure file(s) for 2WEB
  • Retrieve 2WEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WEB from S2C, [Save to disk]
    • View 2WEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WEB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 2WEB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WEB, from MSDmotif at EBI
  • Genome occurence of 2WEB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2web__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2web] [2web_A]
  • SWISS-PROT database: [P00798]
  • Domain organization of [PENP_PENJA] by SWISSPFAM
    • Other resources with information on 2WEB
  • Community annotation for 2WEB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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