2WFM	Hydrolase	date	Apr 08, 2009
title	Crystal Structure Of Polyneuridine Aldehyde Esterase Mutant
authors	L.Yang, M.Hill, S.Panjikar, M.Wang, J.Stoeckigt
compound		source
Molecule: Polyneuridine Aldehyde Esterase Chain: A, B, C, D, E Ec: 3.1.1.78 Engineered: Yes Mutation: Yes		Organism_scientific: Rauvolfia Serpentina Organism_common: Serpentwood Organism_taxid: 4060 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: M15prep4 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe-2
symmetry	Space Group: C 1 2 1	R_factor 0.198 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 170.250 46.810 184.170 90.00 104.89 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand		enzyme	Hydrolase E.C.3.1.1.78 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, E, B
Primary reference	Structural basis and enzymatic mechanism of the biosynthesis of C9- from C10-monoterpenoid indole alkaloids., Yang L, Hill M, Wang M, Panjikar S, Stockigt J, Angew Chem Int Ed Engl. 2009;48(28):5211-3. PMID:19496101

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk] Biological Unit Coordinates (2wfm.pdb1.gz) 42 Kb Biological Unit Coordinates (2wfm.pdb2.gz) 42 Kb Biological Unit Coordinates (2wfm.pdb3.gz) 42 Kb Biological Unit Coordinates (2wfm.pdb4.gz) 42 Kb Biological Unit Coordinates (2wfm.pdb5.gz) 42 Kb CSU: Contacts of Structural Units for 2WFM Structure Factors (980 Kb) Retrieve 2WFM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WFM from S2C, [Save to disk] Re-refined 2wfm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WFM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WFM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WFM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wfm_D] [2wfm_E] [2wfm] [2wfm_C] [2wfm_A] [2wfm_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2WFM

Community annotation for 2WFM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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