2WGR Oxidoreductase date Apr 24, 2009
title Combining Crystallography And Molecular Dynamics: The Case O Schistosoma Mansoni Phospholipid Glutathione Peroxidase
authors D.Dimastrogiovanni, M.Anselmi, A.E.Miele, G.Boumis, F.Angelucci, Nola, M.Brunori, A.Bellelli
compound source
Molecule: Glutathione Peroxidase
Chain: A
Synonym: Phospholipid-Hydroperoxide Glutathione Peroxidase,
Ec: 1.11.1.9
Engineered: Yes
Mutation: Yes
 Organism_scientific: Schistosoma Mansoni
Organism_taxid: 6183
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t1
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.913 51.170 90.622 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand POP enzyme Oxidoreductase E.C.1.11.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity
  • glutathione peroxidase activ...


    • Primary referenceCombining crystallography and molecular dynamics: The case of Schistosoma mansoni phospholipid glutathione peroxidase., Dimastrogiovanni D, Anselmi M, Miele AE, Boumis G, Petersson L, Angelucci F, Nola AD, Brunori M, Bellelli A, Proteins. 2009 Jul 20. PMID:19714775
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2wgr.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2WGR
  • CSU: Contacts of Structural Units for 2WGR
  • Structure Factors (309 Kb)
  • Retrieve 2WGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WGR from S2C, [Save to disk]
  • Re-refined 2wgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WGR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WGR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wgr_A] [2wgr]
  • SWISS-PROT database: [Q00277]
  • Domain organization of [GPX1_SCHMA] by SWISSPFAM
    • Other resources with information on 2WGR
  • Community annotation for 2WGR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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