2WM1	Lyase	date	Jun 29, 2009
title	The Crystal Structure Of Human Alpha-Amino-Beta-Carboxymucon Epsilon-Semialdehyde Decarboxylase In Complex With 1,3- Dihydroxyacetonephosphate Suggests A Regulatory Link Betwee Synthesis And Glycolysis
authors	S.Garavaglia, S.Perozzi, L.Galeazzi, N.Raffaelli, M.Rizzi
compound		source
Molecule: 2-Amino-3-Carboxymuconate-6-Semialdehyde Decarbox Chain: A Synonym: Alpha-Amino-Beta-Carboxymuconate-Epsilon-Semialdeh Decarboxylase; Ec: 4.1.1.45 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_cell_line: Gs115 Expression_system_vector: Phil-D2
symmetry	Space Group: P 32 2 1	R_factor 0.193 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.227 86.227 92.168 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.01 Å
ligand	13P, GOL, ZN	enzyme	Lyase E.C.4.1.1.45 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The crystal structure of human alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase in complex with 1,3-dihydroxyacetonephosphate suggests a regulatory link between NAD synthesis and glycolysis., Garavaglia S, Perozzi S, Galeazzi L, Raffaelli N, Rizzi M, FEBS J. 2009 Oct 16. PMID:19843166

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2wm1.pdb1.gz) 112 Kb LPC: Ligand-Protein Contacts for 2WM1 CSU: Contacts of Structural Units for 2WM1 Structure Factors (1118 Kb) Retrieve 2WM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WM1 from S2C, [Save to disk] Re-refined 2wm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2WM1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2WM1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WM1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wm1_A] [2wm1] SWISS-PROT database: [Q8TDX5] Domain organization of [ACMSD_HUMAN] by SWISSPFAM

Other resources with information on 2WM1

Community annotation for 2WM1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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