2WPO Hydrolase Hydrolase Inhibitor date Aug 04, 1998
title Hcmv Protease Inhibitor Complex
authors L.Tong, C.Qian, M.J.Massariol, R.Deziel, C.Yoakim, L.Lagace
compound source
Molecule: Human Cytomegalovirus Protease
Chain: A, B, C, D
Ec: 3.4.21.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Human Herpesvirus 5
Organism_common: Human Cytomegalovirus
Organism_taxid: 10359
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 2 21
R_factor 0.226 R_Free 0.332
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.800 53.400 212.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 01E enzyme Hydrolase E.C.3.4.21 BRENDA
related structures by homologous chain: 1NJU, 1NKM
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceConserved mode of peptidomimetic inhibition and substrate recognition of human cytomegalovirus protease., Tong L, Qian C, Massariol MJ, Deziel R, Yoakim C, Lagace L, Nat Struct Biol 1998 Sep;5(9):819-26. PMID:9731777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (2wpo.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (2wpo.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2WPO
  • CSU: Contacts of Structural Units for 2WPO
  • Likely Quarternary Molecular Structure file(s) for 2WPO
  • Retrieve 2WPO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WPO from S2C, [Save to disk]
    • View 2WPO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WPO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WPO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2wpoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2wpob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2wpoc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d2wpod_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wpo_A] [2wpo] [2wpo_B] [2wpo_D] [2wpo_C]
  • SWISS-PROT database: [P16753]
  • Domain organization of [PPR_HCMVA] by SWISSPFAM
    • Other resources with information on 2WPO
  • Community annotation for 2WPO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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