2WWJ Oxidoreductase date Oct 23, 2009
title Structure Of Jmjd2a Complexed With Inhibitor 10a
authors N.R.Rose, I.J.Clifton, U.Oppermann, M.A.Mcdonough, C.J.Schofield
compound source
Molecule: Lysine-Specific Demethylase 4a
Chain: A, B
Fragment: Residues 7-353
Synonym: Jumonji Domain Containing Protein 2a, Jmjc Domain- Histone Demethylation Protein 3a;
Ec: 1.14.11.27
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pnic28bsa4
symmetry Space Group: P 21 21 2
R_factor 0.178 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.330 148.970 57.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand NI, Y28, ZN BindingDB enzyme Oxidoreductase E.C.1.14.11.27 BRENDA
Primary referenceSelective inhibitors of the JMJD2 histone demethylases: combined nondenaturing mass spectrometric screening and crystallographic approaches., Rose NR, Woon EC, Kingham GL, King ON, Mecinovic J, Clifton IJ, Ng SS, Talib-Hardy J, Oppermann U, McDonough MA, Schofield CJ, J Med Chem. 2010 Feb 25;53(4):1810-8. PMID:20088513
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (2wwj.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (2wwj.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 2WWJ
  • CSU: Contacts of Structural Units for 2WWJ
  • Structure Factors (565 Kb)
  • Retrieve 2WWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WWJ from S2C, [Save to disk]
  • Re-refined 2wwj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2WWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2WWJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WWJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wwj_A] [2wwj] [2wwj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2WWJ: [JmjC] [JmjN ] by SMART
    • Other resources with information on 2WWJ
  • Community annotation for 2WWJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science