2X1L Ligase date Dec 31, 2009
title Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna In Complex With Methionine And Adenosine
authors H.Ingvarsson, T.A.Jones, T.Unge
compound source
Molecule: Methionyl-Trna Synthetase
Chain: A, B, C
Fragment: Residues 2-515
Ec: 6.1.1.10
Engineered: Yes
Organism_scientific: Mycobacterium Smegmatis
Organism_taxid: 246196
Strain: Mc2 155
Atcc: 700084
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector: Pet 101 D-Topo
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.950 138.910 123.310 90.00 124.84 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 2HP, ADN, CXS, MET enzyme Ligase E.C.6.1.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceFlexibility and communication within the structure of the Mycobacterium smegmatis methionyl-tRNA synthetase., Ingvarsson H, Unge T, FEBS J. 2010 Aug 26. PMID:20796028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (2x1l.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (2x1l.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (2x1l.pdb3.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2X1L
  • CSU: Contacts of Structural Units for 2X1L
  • Structure Factors (1375 Kb)
  • Retrieve 2X1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X1L from S2C, [Save to disk]
  • Re-refined 2x1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X1L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X1L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x1l_C] [2x1l_B] [2x1l_A] [2x1l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X1L
  • Community annotation for 2X1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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