2X31 Ligase date Jan 19, 2010
title Modelling Of The Complex Between Subunits Bchi And Bchd Of M Chelatase Based On Single-Particle Cryo-Em Reconstruction A
authors J.Lunqvist, H.Elmlund, R.Peterson Wulff, L.Berglund, D.Elmlund, C.Emanuelsson, H.Hebert, R.D.Willows, M.Hansson, M.Lindahl, S.Al Karadaghi
compound source
Molecule: Magnesium-Chelatase 60 Kda Subunit
Chain: A, B, C, D, E, F
Fragment: Residues 373-561
Synonym: Mg-Protoporphyrin Ix Chelatase, Mg-Chelatase Subun
Ec: 6.6.1.1
Engineered: Yes
Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Magnesium-Chelatase 38 Kda Subunit
Chain: G, H, I, J, K, L
Synonym: Mg-Protoporphyrin Ix Chelatase
Ec: 6.6.1.1
Engineered: Yes

Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.50 Å
ligand
enzyme Ligase E.C.6.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, J, K, I, G, L


Primary referenceATP-induced conformational dynamics in the AAA+ motor unit of magnesium chelatase., Lundqvist J, Elmlund H, Wulff RP, Berglund L, Elmlund D, Emanuelsson C, Hebert H, Willows RD, Hansson M, Lindahl M, Al-Karadaghi S, Structure. 2010 Mar 10;18(3):354-65. PMID:20223218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (439 Kb) [Save to disk]
  • Biological Unit Coordinates (2x31.pdb1.gz) 434 Kb
  • CSU: Contacts of Structural Units for 2X31
  • Retrieve 2X31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X31 from S2C, [Save to disk]
  • View 2X31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X31
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X31, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x31_D] [2x31] [2x31_H] [2x31_L] [2x31_G] [2x31_A] [2x31_B] [2x31_C] [2x31_E] [2x31_K] [2x31_I] [2x31_F] [2x31_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2X31: [AAA] [VWA ] by SMART
  • Other resources with information on 2X31
  • Community annotation for 2X31 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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