2X5X Hydrolase date Feb 11, 2010
title The Crystal Structure Of Phaz7 At Atomic (1.2 Angstrom) Reso Reveals Details Of The Active Site And Suggests A Substrate Mode
authors S.Wakadkar, S.Hermawan, D.Jendrossek, A.C.Papageorgiou
compound source
Molecule: Phb Depolymerase Phaz7
Chain: A
Fragment: Residues 39-380
Organism_scientific: Paucimonas Lemoignei
Organism_taxid: 29443
symmetry Space Group: P 21 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.630 140.580 56.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CL, IOD, NA, PG4, SO2 enzyme
note 2X5X is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of PhaZ7 at atomic (1.2 A) resolution reveals details of the active site and suggests a substrate-binding mode., Wakadkar S, Hermawan S, Jendrossek D, Papageorgiou AC, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jun 1;66(Pt, 6):648-54. Epub 2010 May 25. PMID:20516591
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2x5x.pdb1.gz) 251 Kb
  • LPC: Ligand-Protein Contacts for 2X5X
  • CSU: Contacts of Structural Units for 2X5X
  • Structure Factors (1445 Kb)
  • Retrieve 2X5X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X5X from S2C, [Save to disk]
  • Re-refined 2x5x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X5X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X5X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X5X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x5x] [2x5x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X5X
  • Community annotation for 2X5X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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