OCA Atlas for 2X98

2X98

Hydrolase

date

Mar 14, 2010

title

H.Salinarum Alkaline Phosphatase

authors

A.Wende, P.Johansson, M.Grininger, D.Oesterhelt

compound

source

Molecule: Alkaline Phosphatase
Chain: A, B
Fragment: Residues 44-474
Ec: 3.1.3.1

Organism_scientific: Halobacterium Salinarum
Organism_taxid: 478009
Strain: R1
Expression_system: Halobacterium Salinarum
Expression_system_taxid: 478009
Expression_system_strain: R1

symmetry

Space Group: C 1 2 1

R_factor

0.16042

R_Free

0.19771

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
72.143	152.524	86.799	90.00	110.00	90.00

method

X-Ray Diffraction

resolution

1.70 Å

ligand

CL, MG, NA, PO4, ZN

enzyme

Hydrolase E.C.3.1.3.1 BRENDA

note

2X98 supersedes 2W0Y

Gene
Ontology

Chain	Function	Process	Component
A, B	alkaline phosphatase activit... phosphatase activity

Primary reference

Structural and biochemical characterization of a halophilic archaeal alkaline phosphatase., Wende A, Johansson P, Vollrath R, Dyall-Smith M, Oesterhelt D, Grininger M, J Mol Biol. 2010 Jul 2;400(1):52-62. Epub 2010 May 11. PMID:20438737

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]

Biological Unit Coordinates (2x98.pdb1.gz) 150 Kb

Biological Unit Coordinates (2x98.pdb2.gz) 150 Kb

Biological Unit Coordinates (2x98.pdb3.gz) 295 Kb

LPC: Ligand-Protein Contacts for 2X98

CSU: Contacts of Structural Units for 2X98

Structure Factors (1362 Kb)

Retrieve 2X98 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2X98 from S2C, [Save to disk]

Re-refined 2x98 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X98 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2X98

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2X98, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x98_B] [2x98] [2x98_A]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domain found in 2X98: [alkPPc ] by SMART

Other resources with information on 2X98

Community annotation for 2X98 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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