2XIR Transferase date Jun 30, 2010
title Crystal Structure Of The Vegfr2 Kinase Domain In Complex Wit 00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)Quinolin-4- Benzofuran-3-Carboxamide)
authors M.Mctigue, J.Wickersham, C.Pinko, Y.Hong, T.Marrone
compound source
Molecule: Vascular Endothelial Growth Factor Receptor 2
Chain: A
Fragment: Kinase Domain, Residues 806-939,990-1171
Synonym: Vegfr-2, Kinase Insert Domain Receptor, Protein-Ty Kinase Receptor Flk-1, Fetal Liver Kinase 1, Flk-1, Cd309;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.217 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.267 56.827 52.187 90.00 94.18 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 00J enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2xir.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2XIR
  • CSU: Contacts of Structural Units for 2XIR
  • Structure Factors (1603 Kb)
  • Retrieve 2XIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XIR from S2C, [Save to disk]
  • Re-refined 2xir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XIR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XIR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xir] [2xir_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XIR: [TyrKc ] by SMART
    • Other resources with information on 2XIR
  • Community annotation for 2XIR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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