2XJH Oxidoreductase date Jul 06, 2010
title Structure And Copper-Binding Properties Of Methanobactins Fr Methylosinus Trichosporium Ob3b
authors A.El-Ghazouani, A.Basle, S.J.Firbank, C.W.Knapp, J.Gray, D.W.Grah C.Dennison
compound source
Molecule: Methanobactin Mb-Ob3b
Chain: A, B
Synonym: Copper-Binding Compound, Cbc, Hydrogen Peroxide Re Superoxide Dismutase, Minus-Met Methanobactin;
Ec: 1.11.1.-, 1.15.1.1
 Organism_scientific: Methylosinus Trichosporium
Organism_taxid: 595536
Strain: Ob3b
Other_details: Ncimb 11131
symmetry Space Group: P 41 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.475 29.475 29.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.92 Å
ligand BB9, COI, CU, NA enzyme Oxidoreductase E.C.1.11.1 BRENDA
Primary referenceCopper-Binding Properties and Structures of Methanobactins from Methylosinus trichosporium OB3b., El Ghazouani A, Basle A, Firbank SJ, Knapp CW, Gray J, Graham DW, Dennison C, Inorg Chem. 2011 Jan 21. PMID:21254756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (2xjh.pdb1.gz) 5 Kb
  • Biological Unit Coordinates (2xjh.pdb2.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 2XJH
  • CSU: Contacts of Structural Units for 2XJH
  • Structure Factors (88 Kb)
  • Retrieve 2XJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XJH from S2C, [Save to disk]
  • Re-refined 2xjh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XJH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xjh] [2xjh_A] [2xjh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XJH
  • Community annotation for 2XJH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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