2XQ2 Transport Protein date Sep 01, 2010
title Structure Of The K294a Mutant Of Vsglt
authors A.Watanabe, S.Choe, V.Chaptal, J.M.Rosenberg, E.M.Wright, M.Grabe J.Abramson
compound source
Molecule: Sodiumglucose Cotransporter
Chain: A
Synonym: Vsglt, Na(+)Glucose Symporter
Engineered: Yes
Mutation: Yes
Organism_scientific: Vibrio Parahaemolyticus
Organism_taxid: 670
Atcc: 17802
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad18

Molecule: Sodiumglucose Cotransporter
Chain: B
Synonym: Vsglt, Na(+)Glucose Symporter
Engineered: Yes
Mutation: Yes

Organism_scientific: Vibrio Parahaemolyticus
Organism_taxid: 670
Atcc: 17802
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad18
symmetry Space Group: P 21 21 21
R_factor 0.251 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.300 112.680 238.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.73 Å
ligand PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe mechanism of sodium and substrate release from the binding pocket of vSGLT., Watanabe A, Choe S, Chaptal V, Rosenberg JM, Wright EM, Grabe M, Abramson J, Nature. 2010 Dec 5. PMID:21131949
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (350 Kb) [Save to disk]
  • Biological Unit Coordinates (2xq2.pdb1.gz) 341 Kb
  • LPC: Ligand-Protein Contacts for 2XQ2
  • CSU: Contacts of Structural Units for 2XQ2
  • Structure Factors (487 Kb)
  • Retrieve 2XQ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XQ2 from S2C, [Save to disk]
  • Re-refined 2xq2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XQ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XQ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XQ2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xq2] [2xq2_A] [2xq2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XQ2
  • Community annotation for 2XQ2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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