2XR6	Sugar Binding Protein	date	Sep 10, 2010
title	Crystal Structure Of The Complex Of The Carbohydrate Recogni Domain Of Human Dc-Sign With Pseudo Trimannoside Mimic.
authors	M.Thepaut, I.Suitkeviciute, S.Sattin, J.Reina, A.Bernardi, F.Fies
compound		source
Molecule: Cd209 Antigen Chain: A Fragment: Carbohydrate Recognition Domain, Residues 250-404 Synonym: Dc-Sign, Dendritic Cell-Specific Icam-3-Grabbing N Integrin 1, Dc-Sign1, C-Type Lectin Domain Family 4 Member Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pask-Iba7plus
symmetry	Space Group: P 43 21 2	R_factor 0.147 R_Free 0.168
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.330 71.330 52.666 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.35 Å
ligand	07B, AE9, CA, CL, MAN	enzyme
note	2XR6 is a representative structure
Primary reference	Unique DC-SIGN Clustering Activity of a Small Glycomimetic: A Lesson for Ligand Design., Sutkeviciute I, Thepaut M, Sattin S, Berzi A, McGeagh J, Grudinin S, Weiser J, Le Roy A, Reina JJ, Rojo J, Clerici M, Bernardi A, Ebel C, Fieschi F, ACS Chem Biol. 2014 May 6. PMID:24749535

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (2xr6.pdb1.gz) 30 Kb LPC: Ligand-Protein Contacts for 2XR6 CSU: Contacts of Structural Units for 2XR6 Structure Factors (186 Kb) Retrieve 2XR6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XR6 from S2C, [Save to disk] Re-refined 2xr6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XR6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2XR6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XR6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xr6_A] [2xr6] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2XR6: [CLECT ] by SMART

Other resources with information on 2XR6

Community annotation for 2XR6 at PDBWiki (http://pdbwiki.org)

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