2XWT Signaling Protein Immune System date Nov 05, 2010
title Crystal Structure Of The Tsh Receptor In Complex With A Bloc Tshr Autoantibody
authors J.Sanders, P.Sanders, S.Young, K.Kabelis, S.Baker, A.Sullivan, M.E J.Clark, J.Wilmot, X.Hu, E.Roberts, M.Powell, R.Nunez Miguel, J.F B.Rees Smith
compound source
Molecule: Thyroid Blocking Human Autoantibody K1-70 Heavy C
Chain: A
Fragment: Fab Fragment Heavy Chain, Residues 1-229
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Mouse-Human Heterohybridoma Cell Line
Expression_system_taxid: 37965

Molecule: Thyroid Blocking Human Autoantibody K1-70 Light C
Chain: B
Fragment: Fab Fragment Light Chain, Residues 1-213
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Mouse-Human Heterohybridoma Cell Line
Expression_system_taxid: 37965

Molecule: Thyrotropin Receptor
Chain: C
Fragment: Leucine Rich Repeat Domain, Residues 22-260
Synonym: Thyroid-Stimulating Hormone Receptor, Tsh-R
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.020 89.300 101.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceCrystal structure of the TSH receptor (TSHR) bound to a blocking-type TSHR autoantibody., Sanders P, Young S, Sanders J, Kabelis K, Baker S, Sullivan A, Evans M, Clark J, Wilmot J, Hu X, Roberts E, Powell M, Nunez Miguel R, Furmaniak J, Rees Smith B, J Mol Endocrinol. 2011 Feb 15;46(2):81-99. Print 2011. PMID:21247981
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2xwt.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 2XWT
  • CSU: Contacts of Structural Units for 2XWT
  • Structure Factors (422 Kb)
  • Retrieve 2XWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XWT from S2C, [Save to disk]
  • Re-refined 2xwt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XWT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XWT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xwt] [2xwt_C] [2xwt_B] [2xwt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2XWT: [IG_like] [IGv ] by SMART
  • Other resources with information on 2XWT
  • Community annotation for 2XWT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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