2XYA Hydrolase date Nov 16, 2010
title Non-Covalent Inhibtors Of Rhinovirus 3c Protease.
authors J.Petersen, K.Edman, F.Edfeldt, C.Johansson
compound source
Molecule: Picornain 3c
Chain: A
Synonym: Protease 3c, P3c, Human Rhinovirus 3c Protease
Ec: 3.4.22.28
Engineered: Yes
 Organism_scientific: Human Rhinovirus Sp.
Organism_taxid: 169066
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 2 2
R_factor 0.22719 R_Free 0.28850
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.143 126.143 75.454 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 7L4 enzyme Hydrolase E.C.3.4.22.28 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNon-covalent inhibitors of rhinovirus 3C protease., Baxter A, Chambers M, Edfeldt F, Edman K, Freeman A, Johansson C, King S, Morley A, Petersen J, Rawlins P, Spadola L, Thong B, Van de Poel H, Williams N, Bioorg Med Chem Lett. 2011 Jan 15;21(2):777-80. Epub 2010 Nov 26. PMID:21183345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2xya.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2XYA
  • CSU: Contacts of Structural Units for 2XYA
  • Structure Factors (112 Kb)
  • Retrieve 2XYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XYA from S2C, [Save to disk]
  • Re-refined 2xya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XYA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XYA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xya_A] [2xya]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XYA
  • Community annotation for 2XYA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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