2XYJ	Transcription	date	Nov 18, 2010
title	Novel Sulfonylthiadiazoles With An Unusual Binding Mode As P Dual Peroxisome Proliferator-Activated Receptor (Ppar) Gamm Agonists With High Potency And In-Vivo Efficacy
authors	J.P.Marquette, M.Mathieu
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Delta Chain: A, B Fragment: Ligand Binding Domain, Residues 165-441 Synonym: Ppar-Delta, Nuci, Nuclear Hormone Receptor 1, Nuc1 Receptor Subfamily 1 Group C Member 2, Peroxisome Prolifera Activated Receptor Beta, Ppar-Beta, Peroxisome Proliferator Receptor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: C 1 2 1	R_factor 0.208 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.749 112.009 152.573 90.00 95.71 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	1PE, WLM	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Sulfonylthiadiazoles with an unusual binding mode as partial dual peroxisome proliferator-activated receptor (PPAR) gamma/delta agonists with high potency and in vivo efficacy., Keil S, Matter H, Schonafinger K, Glien M, Mathieu M, Marquette JP, Michot N, Haag-Diergarten S, Urmann M, Wendler W, ChemMedChem. 2011 Apr 4;6(4):633-53. doi: 10.1002/cmdc.201100047. Epub, 2011 Mar 11. PMID:21400663

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (2xyj.pdb1.gz) 48 Kb Biological Unit Coordinates (2xyj.pdb2.gz) 46 Kb LPC: Ligand-Protein Contacts for 2XYJ CSU: Contacts of Structural Units for 2XYJ Structure Factors (203 Kb) Retrieve 2XYJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XYJ from S2C, [Save to disk] Re-refined 2xyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XYJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2XYJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XYJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xyj_A] [2xyj_B] [2xyj] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2XYJ: [HOLI ] by SMART

Other resources with information on 2XYJ

Community annotation for 2XYJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---