2Y95 Rna date Feb 11, 2011
title Solution Structure Of Aucg Tetraloop Hairpin Found In Human A-Repeats Essential For X-Inactivation
authors M.M.Duszczyk, M.Sattler
compound source
Molecule: 5'-R(Gpgpcpgpcpapupcpgpgpcpgpcpc)-3
Chain: A
Fragment: Hairpin 1, Residues 609-622
Synonym: Xist Rna A-Repeat, Homo Sapiens X (Inactive)-Speci Transcript, Xist;
Engineered: Yes
Mutation: Yes
Other_details: Hairpin 1 From The 6th Human A-Repeat Corres Nucleotides 609-622 In M97168.1 Genbank Entry. The Third G- Pair Is Replaced By C-G To Facilitate Chemical Shift Assign The Closing G-U Base Pair Is Replaced By G-C
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Primary referenceThe Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization., Duszczyk MM, Wutz A, Rybin V, Sattler M, RNA. 2011 Nov;17(11):1973-82. Epub 2011 Sep 26. PMID:21947263
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2y95.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2Y95
  • Original NMR restraints for 2Y95 from PDB
  • Retrieve 2Y95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y95 from S2C, [Save to disk]
    • View 2Y95 in 3D
  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 2Y95
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y95, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y95] [2y95_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2Y95
  • Community annotation for 2Y95 at PDBWiki (http://pdbwiki.org)
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