2YB1 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AMP, MN, PO4 enzyme
note 2YB1 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProspecting for Unannotated Enzymes: Discovery of a 3',5'-Nucleotide Bisphosphate Phosphatase within the Amidohydrolase Superfamily., Cummings JA, Vetting M, Ghodge SV, Xu C, Hillerich B, Seidel RD, Almo SC, Raushel FM, Biochemistry. 2014 Jan 13. PMID:24401123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (2yb1.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2YB1
  • CSU: Contacts of Structural Units for 2YB1
  • Structure Factors (955 Kb)
  • Retrieve 2YB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YB1 from S2C, [Save to disk]
  • Re-refined 2yb1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yb1] [2yb1_A]
  • SWISS-PROT database:
  • Domain found in 2YB1: [POLIIIAc ] by SMART

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