2YEW	Virus	date	Mar 31, 2011
title	Modeling Barmah Forest Virus Structural Proteins
authors	V.A.Kostyuchenko, J.Jakana, X.Liu, A.D.Haddow, M.Aung, S.C.Weaver S.M.Lok
compound		source
Molecule: Capsid Protein Chain: A, D, G, J Synonym: Coat Protein Ec: 3.4.21.90 Engineered: Yes		Organism_scientific: Barmah Forest Virus Organism_taxid: 11020 Expression_system: Mesocricetus Auratus Expression_system_common: Golden Hamster Expression_system_taxid: 10036 Expression_system_cell_line: Bhk-21
Molecule: E1 Envelope Glycoprotein Chain: B, E, H, K Synonym: Spike Glycoprotein E1 Engineered: Yes		Organism_scientific: Barmah Forest Virus Organism_taxid: 11020 Expression_system: Mesocricetus Auratus Expression_system_common: Golden Hamster Expression_system_taxid: 10036 Expression_system_cell_line: Bhk-21
Molecule: E2 Envelope Glycoprotein Chain: C, F, I, L Synonym: Spike Glycoprotein E2 Engineered: Yes		Organism_scientific: Barmah Forest Virus Organism_taxid: 11020 Expression_system: Mesocricetus Auratus Expression_system_common: Golden Hamster Expression_system_taxid: 10036 Expression_system_cell_line: Bhk-21
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	5.00 Å
ligand		enzyme	Hydrolase E.C.3.4.21.90 BRENDA
Gene Ontology	Chain Function Process Component A, J, D, G F, C, I, L K, E, B, H
Primary reference	The structure of barmah forest virus as revealed by cryo-electron microscopy at a 6-angstrom resolution has detailed transmembrane protein architecture and interactions., Kostyuchenko VA, Jakana J, Liu X, Haddow AD, Aung M, Weaver SC, Chiu W, Lok SM, J Virol. 2011 Sep;85(18):9327-33. Epub 2011 Jul 13. PMID:21752915

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (549 Kb) [Save to disk] Biological Unit Coordinates (2yew.pdb1.gz) 31692 Kb CSU: Contacts of Structural Units for 2YEW Retrieve 2YEW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YEW from S2C, [Save to disk]

View 2YEW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YEW

VIPERdb: visual, structural and computational analysis of 2YEW Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YEW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yew_E] [2yew_I] [2yew_J] [2yew_B] [2yew_F] [2yew_G] [2yew] [2yew_A] [2yew_L] [2yew_K] [2yew_C] [2yew_H] [2yew_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2YEW

Community annotation for 2YEW at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---