2YGE Chaperone date Apr 14, 2011
title E88g-N92l Mutant Of N-Term Hsp90 Complexed With Geldanamycin
authors M.Roe, C.Prodromou, L.H.Pearl
compound source
Molecule: Atp-Dependent Molecular Chaperone Hsp82
Chain: A
Fragment: N-Terminus, Residues 1-220
Synonym: 82 Kda Heat Shock Protein, Heat Shock Protein Hsp9 Heat-Inducible Isoform, Hsp90;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 2 2
R_factor 0.1938 R_Free 0.2294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.010 74.010 110.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand GDM, GOL BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFeatures of the Streptomyces hygroscopicus HtpG reveal how partial geldanamycin resistance can arise with mutation to the ATP binding pocket of a eukaryotic Hsp90., Millson SH, Chua CS, Roe SM, Polier S, Solovieva S, Pearl LH, Sim TS, Prodromou C, Piper PW, FASEB J. 2011 Nov;25(11):3828-37. Epub 2011 Jul 21. PMID:21778327
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (2yge.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 2YGE
  • CSU: Contacts of Structural Units for 2YGE
  • Structure Factors (1121 Kb)
  • Retrieve 2YGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YGE from S2C, [Save to disk]
  • Re-refined 2yge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YGE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YGE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yge] [2yge_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YGE: [HATPase_c ] by SMART
    • Other resources with information on 2YGE
  • Community annotation for 2YGE at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science